Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter sp.
NCBI Strain Identifiers SAT40
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 1.43%
CheckM Strain Heterogeneity 85.71
5S Count 0
16S Count 2
23S Count 0
tRNA Count 19
Contig Count 46
N50 Contigs 129,154 bp
Longest Contig 346,276 bp
Scaffold Count 46
N50 Scaffolds 129,154 bp
Longest Scaffold 346,334 bp
Genome Size 3,830,489 bp
Protein Count 3,599
Coding Density 91.73%
GC Percentage 57.10%
Ambiguous Bases 0
GTDB representative GCF_000420325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM270650v1
Assembly Type n/a
Bioproject PRJNA391943
Biosample SAMN07620126
Country None
Date 2017-10-25
Genbank Assembly Accession GCA_002706505.1
Genome Category MAG
Genome Representation full
Isolate SAT40
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 3,567
Refseq Category na
Seq Rel Date 2017/10/25
Spanned Gaps 0
Species Taxid 2024860
SSU Count 2
Submitter Tara Oceans Consortium
Taxid 2024860
Total Gap Length 0
Translation Table 11
tRNA Count (total) 40
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master PALP00000000.1