Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
NCBI Strain Identifiers UBA7228
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 99.57%
CheckM Contamination 0.05%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 18
Contig Count 62
N50 Contigs 117,556 bp
Longest Contig 349,129 bp
Scaffold Count 35
N50 Scaffolds 154,119 bp
Longest Scaffold 349,129 bp
Genome Size 3,598,145 bp
Protein Count 3,322
Coding Density 91.71%
GC Percentage 57.36%
Ambiguous Bases 0
GTDB representative GCF_000420325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM247334v1
Assembly Type n/a
Bioproject PRJNA348753
Biosample SAMN06456508
Country None
Date 2017-10-6
Genbank Assembly Accession GCA_002473345.1
Genome Category MAG
Genome Representation full
Isolate UBA7228
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 0
Refseq Category na
Seq Rel Date 2017/10/06
Spanned Gaps 27
Species Taxid 454602
SSU Count 0
Submitter University of Queensland
Taxid 454602
Total Gap Length 9220
Translation Table None
tRNA Count (total) 0
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master DKTO00000000.1