Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter sp. UBA6593
NCBI Strain Identifiers UBA6593
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 90.11%
CheckM Contamination 0.74%
CheckM Strain Heterogeneity 25.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 9
Contig Count 310
N50 Contigs 23,247 bp
Longest Contig 82,871 bp
Scaffold Count 170
N50 Scaffolds 31,220 bp
Longest Scaffold 82,871 bp
Genome Size 3,312,647 bp
Protein Count 3,175
Coding Density 89.88%
GC Percentage 57.74%
Ambiguous Bases 0
GTDB representative GCF_000420325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM243364v1
Assembly Type n/a
Bioproject PRJNA348753
Biosample SAMN06451398
Country None
Date 2017-10-4
Genbank Assembly Accession GCA_002433645.1
Genome Category MAG
Genome Representation full
Isolate UBA6593
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 0
Refseq Category na
Seq Rel Date 2017/10/04
Spanned Gaps 140
Species Taxid 1947544
SSU Count 0
Submitter University of Queensland
Taxid 1947544
Total Gap Length 43099
Translation Table None
tRNA Count (total) 0
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master DJIN00000000.1