Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Cellvibrionales; f__Spongiibacteraceae; g__Spongiibacter; s__Spongiibacter tropicus
NCBI Strain Identifiers UBA850
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 91.78%
CheckM Contamination 1.78%
CheckM Strain Heterogeneity 14.29
5S Count 0
16S Count 0
23S Count 0
tRNA Count 19
Contig Count 219
N50 Contigs 33,431 bp
Longest Contig 89,626 bp
Scaffold Count 141
N50 Scaffolds 43,468 bp
Longest Scaffold 121,696 bp
Genome Size 3,480,006 bp
Protein Count 3,339
Coding Density 90.40%
GC Percentage 57.33%
Ambiguous Bases 0
GTDB representative GCF_000420325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM229544v1
Assembly Type n/a
Bioproject PRJNA348753
Biosample SAMN06450329
Country None
Date 2017-9-12
Genbank Assembly Accession GCA_002295445.1
Genome Category MAG
Genome Representation full
Isolate UBA850
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 0
Refseq Category na
Seq Rel Date 2017/09/12
Spanned Gaps 78
Species Taxid 454602
SSU Count 0
Submitter University of Queensland
Taxid 454602
Total Gap Length 23183
Translation Table None
tRNA Count (total) 0
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master DBGQ00000000.1