Enterobacter himalayensis
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Enterobacter; s__Enterobacter himalayensis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter himalayensis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Sphingobacteriia; o__Sphingobacteriales; f__Sphingobacteriaceae; g__Pedobacter; s__Pedobacter himalayensis
NCBI Strain Identifiers HHS 22
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1,110 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.44%
CheckM Contamination 0.46%
CheckM Strain Heterogeneity 50.0
5S Count 5
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 85
N50 Contigs 135,892 bp
Longest Contig 353,157 bp
Scaffold Count 85
N50 Scaffolds 135,892 bp
Longest Scaffold 353,157 bp
Genome Size 4,679,119 bp
Protein Count 4,352
Coding Density 89.91%
GC Percentage 55.62%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM200368v1
Assembly Type n/a
Bioproject PRJNA252799
Biosample SAMN03159271
Country None
Date 2017-02-17
Genbank Assembly Accession GCA_002003685.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,450
Refseq Category na
Seq Rel Date 2017/02/17
Spanned Gaps 0
Species Taxid 246796
SSU Count 1
Submitter Centre for Cellular and Molecular Biology
Taxid 246796
Total Gap Length 0
Translation Table 11
tRNA Count (total) 68
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master MPZO00000000.1