Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__UBA4486; f__UBA4486; g__RBG-16-51-14; s__RBG-16-51-14 sp001802375
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; x__unclassified Gammaproteobacteria; x__unclassified Gammaproteobacteria (miscellaneous); s__Gammaproteobacteria bacterium RBG_16_51_14
NCBI Strain Identifiers
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 87.55%
CheckM Contamination 2.2%
CheckM Strain Heterogeneity 7.14
5S Count 0
16S Count 1
23S Count 0
tRNA Count 15
Contig Count 660
N50 Contigs 12,799 bp
Longest Contig 72,877 bp
Scaffold Count 154
N50 Scaffolds 22,279 bp
Longest Scaffold 76,708 bp
Genome Size 2,672,257 bp
Protein Count 2,723
Coding Density 84.27%
GC Percentage 51.06%
Ambiguous Bases 311
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM180237v1
Assembly Type n/a
Bioproject PRJNA288027
Biosample SAMN04313749
Country USA: Rifle; CO
Date 2016-10-20
Genbank Assembly Accession GCA_001802375.1
Genome Category MAG
Genome Representation full
Isolate None
Isolation Source Rifle background sediment; well D04 at 16ft depth
Latitude Longitude 39.5369 N 107.7828 W
Molecule Count N/A
CDS Count 2,646
Refseq Category na
Seq Rel Date 2016/10/20
Spanned Gaps 506
Species Taxid 1798265
SSU Count 1
Submitter Banfield Lab, University of California, Berkeley
Taxid 1798265
Total Gap Length 40111
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MGXK00000000.1