XYA2-FULL-35-8 sp001778235
MAG MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Patescibacteria; c__ABY1; o__UBA11705; f__UBA11705; g__XYA2-FULL-35-8; s__XYA2-FULL-35-8 sp001778235
Filtered NCBI Taxonomy d__Bacteria; p__Candidatus Falkowbacteria; c__; o__; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__unclassified Bacteria; x__Bacteria candidate phyla; x__Patescibacteria group; x__Parcubacteria group; p__Candidatus Falkowbacteria; s__Candidatus Falkowbacteria bacterium RIFOXYC2_FULL_36_12
NCBI Strain Identifiers
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 71.45%
CheckM Contamination 1.98%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 23
N50 Contigs 93,176 bp
Longest Contig 165,372 bp
Scaffold Count 8
N50 Scaffolds 261,096 bp
Longest Scaffold 333,956 bp
Genome Size 1,088,258 bp
Protein Count 1,077
Coding Density 85.99%
GC Percentage 35.25%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM177823v1
Assembly Type n/a
Bioproject PRJNA288027
Biosample SAMN04314599
Country USA: Rifle; CO
Date 2016-10-19
Genbank Assembly Accession GCA_001778235.1
Genome Category MAG
Genome Representation full
Isolate None
Isolation Source Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C
Latitude Longitude 39.5369 N 107.7828 W
Molecule Count 0
Protein Count 1,063
Refseq Category na
Seq Rel Date 2016/10/19
Spanned Gaps 15
Species Taxid 1798002
SSU Count 1
Submitter Banfield Lab, University of California, Berkeley
Taxid 1798002
Total Gap Length 903
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MFGJ00000000.1