Pasteurella multocida
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pasteurellales; f__Pasteurellaceae; g__Pasteurella; s__Pasteurella multocida
NCBI Strain Identifiers sheep;NIVEDI;NIVEDI/PMS-1;PMS-1
GTDB Type Material Designation not type material
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 97.73%
CheckM Contamination 0.45%
CheckM Strain Heterogeneity 50.0
5S Count 5
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 67
N50 Contigs 88,258 bp
Longest Contig 210,992 bp
Scaffold Count 67
N50 Scaffolds 88,258 bp
Longest Scaffold 210,992 bp
Genome Size 2,543,931 bp
Protein Count 2,988
Coding Density 88.01%
GC Percentage 40.23%
Ambiguous Bases 7
GTDB representative GCF_000754275.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM172395v1
Assembly Type n/a
Bioproject PRJNA339918
Biosample SAMN05717776
Country India: Bangalore
Date 2016-9-13
Genbank Assembly Accession GCA_001723955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 12.9716 N 77.59460000000001 E
Molecule Count 0
Protein Count 2,510
Refseq Category na
Seq Rel Date 2016/09/13
Spanned Gaps 0
Species Taxid 747
SSU Count 3
Submitter Madurai kamaraj university
Taxid 747
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master MEDF00000000.1