Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Oscillospirales; f__Acutalibacteraceae; g__DTU033; s__DTU033 sp001513365
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__; g__; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; x__unclassified Clostridiales; x__unclassified Clostridiales (miscellaneous); s__Clostridiales bacterium DTU033
NCBI Strain Identifiers DTU033
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 93.4%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 66.67
5S Count 2
16S Count 0
23S Count 0
tRNA Count 17
Contig Count 164
N50 Contigs 16,202 bp
Longest Contig 83,800 bp
Scaffold Count 141
N50 Scaffolds 17,991 bp
Longest Scaffold 83,804 bp
Genome Size 1,475,242 bp
Protein Count 1,448
Coding Density 88.37%
GC Percentage 52.48%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM151336v1
Assembly Type n/a
Bioproject PRJNA283298
Biosample SAMN03794748
Country Denmark: Kgs. Lyngby
Date 2016-1-12
Genbank Assembly Accession GCA_001513365.1
Genome Category MAG
Genome Representation full
Isolate DTU033
Isolation Source pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)
Latitude Longitude 55.788338 N 12.526485 E
Molecule Count 0
Protein Count 0
Refseq Category na
Seq Rel Date 2016/01/12
Spanned Gaps 23
Species Taxid 1676153
SSU Count 0
Submitter Technical University of Denmark
Taxid 1676153
Total Gap Length 1509
Translation Table None
tRNA Count (total) 0
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LFTH00000000.1