Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacterota; c__Methanomicrobia; o__Methanomicrobiales; f__Methanomicrobiaceae; g__LKUD01; s__LKUD01 sp001412355
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanomicrobiales; f__Methanomicrobiaceae; g__Methanoculleus; s__
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Methanomicrobia; o__Methanomicrobiales; f__Methanomicrobiaceae; g__Methanoculleus; s__Methanoculleus sp. SDB
NCBI Strain Identifiers SDB
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 98.37%
CheckM Contamination 1.31%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 109
N50 Contigs 39,717 bp
Longest Contig 91,488 bp
Scaffold Count 109
N50 Scaffolds 39,717 bp
Longest Scaffold 91,488 bp
Genome Size 2,085,722 bp
Protein Count 2,185
Coding Density 90.29%
GC Percentage 56.59%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM141235v1
Assembly Type n/a
Bioproject PRJNA293354
Biosample SAMN04125645
Country USA: San Diego Bay Sediment
Date 2015-10-26
Genbank Assembly Accession GCA_001412355.1
Genome Category MAG
Genome Representation full
Isolate SDB
Isolation Source methanogenic consortium capable of long-chain paraffin degradation (SDB culture) enriched from contaminated sediments of San Diego Bay; California; degrades n-alkanes from C25 to C50
Latitude Longitude 32.70 N 117.16 W
Molecule Count 0
Protein Count 2,137
Refseq Category na
Seq Rel Date 2015/10/26
Spanned Gaps 0
Species Taxid 1735326
SSU Count 1
Submitter University of Oklahoma
Taxid 1735326
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKUD00000000.1