Lactobacillus_G otakiensis
Isolate HQ 16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus_G; s__Lactobacillus_G otakiensis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus otakiensis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus otakiensis; x__Lactobacillus otakiensis DSM 19908 = JCM 15040
NCBI Strain Identifiers JCM 15040
GTDB Type Material Designation type strain of species
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 96.32%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 20
N50 Contigs 243,124 bp
Longest Contig 685,328 bp
Scaffold Count 20
N50 Scaffolds 243,124 bp
Longest Scaffold 685,328 bp
Genome Size 2,342,138 bp
Protein Count 3,035
Coding Density 84.93%
GC Percentage 42.35%
Ambiguous Bases 0
GTDB representative GCF_001434145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM131139v1
Assembly Type n/a
Bioproject PRJDB775
Biosample SAMD00000446
Country None
Date 2015-10-1
Genbank Assembly Accession GCA_001311395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Protein Count 0
Refseq Category na
Seq Rel Date 2015/10/01
Spanned Gaps 0
Species Taxid 481720
SSU Count 0
Submitter The University of Tokyo
Taxid 1423780
Total Gap Length 0
Translation Table None
tRNA Count (total) 0
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BBAT00000000.1