Lacticaseibacillus rhamnosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus rhamnosus
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus rhamnosus; x__Lactobacillus rhamnosus DSM 20021 = JCM 1136 = NBRC 3425
NCBI Strain Identifiers JCM 1136
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (176 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.12%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 63
N50 Contigs 90,368 bp
Longest Contig 202,159 bp
Scaffold Count 63
N50 Scaffolds 90,368 bp
Longest Scaffold 202,159 bp
Genome Size 2,934,843 bp
Protein Count 3,021
Coding Density 85.04%
GC Percentage 46.68%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM61524v1
Assembly Type n/a
Bioproject PRJDB639
Biosample SAMD00000741
Country None
Date 2014-3-31
Genbank Assembly Accession GCA_000615245.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count N/A
Refseq Category na
Seq Rel Date 2014/03/31
Spanned Gaps 0
Species Taxid 47715
SSU Count 0
Submitter The University of Tokyo
Taxid 1423797
Total Gap Length 0
Translation Table None
tRNA Count (total) 0
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master BALT00000000.1