Vermiphilus pyriformis
SAG MQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Dependentiae; c__Babeliae; o__Babeliales; f__Vermiphilaceae; g__Vermiphilus; s__Vermiphilus pyriformis
Filtered NCBI Taxonomy d__Bacteria; p__; c__; o__; f__; g__Vermiphilus; s__Vermiphilus pyriformis
Unfiltered NCBI Taxonomy d__Bacteria; x__unclassified Bacteria; x__Bacteria candidate phyla; x__Candidatus Dependentiae; g__Vermiphilus; s__Vermiphilus pyriformis; x__candidate division TM6 bacterium JCVI TM6SC1
NCBI Strain Identifiers TM6SC1
GTDB Type Material Designation not type material
GTDB Representative of Species True
Genome Characteristics
CheckM Completeness 85.39%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 7
N50 Contigs 273,590 bp
Longest Contig 464,047 bp
Scaffold Count 7
N50 Scaffolds 273,590 bp
Longest Scaffold 464,047 bp
Genome Size 1,074,689 bp
Protein Count 1,008
Coding Density 88.75%
GC Percentage 36.39%
Ambiguous Bases 0
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM38563v1
Assembly Type n/a
Bioproject PRJNA193445
Biosample SAMN02436396
Country USA: San Diego; California
Date 2013-4-29
Genbank Assembly Accession GCA_000385635.1
Genome Category Single Cell
Genome Representation full
Isolate None
Isolation Source single cell isolated from hospital sink drain biofilm; amplified by MDA
Latitude Longitude None
Molecule Count 0
Protein Count 860
Refseq Category na
Seq Rel Date 2013/04/29
Spanned Gaps 0
Species Taxid 1763547
SSU Count 1
Submitter J. Craig Venter Institute
Taxid 1306947
Total Gap Length 0
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ARQD00000000.1