GTDB
  • Browsers
    • Alphabetical table
    • Taxonomy tree
    • AnnoTree (Third party)
  • Tools
    • GTDB-Tk
    • Third Party
  • Downloads
  • Statistics
  • Help
    • About
    • FAQ
    • Contact us
  • All Fields
  • GTDB Taxonomy
  • NCBI Taxonomy
  • NCBI Organism name
  • NCBI Id

GCF_002742445.1

Bifidobacterium sp.

All Taxonomic Information Genome Characteristics NCBI Metadata
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinobacteria; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium sp. N4G05
NCBI Type Material No
Genome Characteristics
Ambiguous Bases 3
CheckM Completeness 99.77
CheckM Contamination 0.0
CheckM Genome Count 77
CheckM Marker Count 464
CheckM Marker Lineage f__Bifidobacteriaceae (UID1458)
CheckM Marker Set Count 220
CheckM Strain Heterogeneity 0.0
Genome Representative True
Coding Bases 1804936
Coding Density 87.23
Contig Count 12
GC Count 1159846
GC Percentage 56.05
Genome Size 2069141
L50 Contigs 3
L50 Scaffolds 3
Longest Contig 407589
Longest Scaffold 407589
Mean Contig Length 172428
Mean Scaffold Length 172428
N50 Contigs 352734
N50 Scaffolds 352734
Protein Count 1683
Scaffold Count 12
SSU_Count 2
Total Gap Length 0
NCBI Metadata
Asm Name ASM274244v1
Assembly Level Contig
Assembly Name ASM274244v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN07189853
Country None
Date 2017-11-2
Genbank Assembly Accession GCA_002742445.1
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 0
Ncrna Count 0
Organism Name Bifidobacterium sp. N4G05
Protein Count 1683
Refseq Category na
Region Count 0
Release Type major
Rrna Count 9
Seq Rel Date 2017/11/02
Spanned Gaps 0
Species Taxid 2013020
Ssu Count 2
Submitter University of Saskatchewan
Taxid 2013020
Total Gap Length 0
Translation Table 11
Trna Count 54
Unspanned Gaps 0
Version Status latest
Wgs Master NJNQ00000000.1

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page