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GCF_002156705.1

B1-Br10-E2g2 sp.

All Taxonomic Information Genome Characteristics NCBI Metadata
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacterota; c__Halobacteria; o__Halobacteriales; f__Haloferacaceae; g__B1-Br10-E2g2; s__
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Halobacteria; o__Natrialbales; f__Natrialbaceae; g__; s__
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Halobacteria; o__Natrialbales; f__Natrialbaceae; x__unclassified Natrialbaceae; s__Natrialbaceae archaeon JW/NM-HA 15
NCBI Type Material No
Genome Characteristics
Ambiguous Bases 0
CheckM Completeness 99.53
CheckM Contamination 0.4
CheckM Genome Count 51
CheckM Marker Count 395
CheckM Marker Lineage f__Halobacteriaceae (UID85)
CheckM Marker Set Count 250
CheckM Strain Heterogeneity 0.0
Genome Representative True
Coding Bases 3364376
Coding Density 85.60
Contig Count 1
GC Count 2519806
GC Percentage 64.11
Genome Size 3930546
L50 Contigs 1
L50 Scaffolds 1
Longest Contig 3930546
Longest Scaffold 3930546
Mean Contig Length 3930546
Mean Scaffold Length 3930546
N50 Contigs 3930546
N50 Scaffolds 3930546
Protein Count 3804
Scaffold Count 1
SSU_Count 2
Total Gap Length 0
NCBI Metadata
Asm Name ASM215670v1
Assembly Level Complete Genome
Assembly Name ASM215670v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN06349942
Country None
Date 2017-5-23
Genbank Assembly Accession GCA_002156705.1
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
Ncrna Count 0
Organism Name Natrialbaceae archaeon JW/NM-HA 15
Protein Count 3729
Refseq Category representative genome
Region Count 0
Release Type major
Rrna Count 6
Seq Rel Date 2017/05/23
Spanned Gaps 0
Species Taxid 1902251
Ssu Count 2
Submitter Chinese Academy of Agricultural Sciences
Taxid 1902251
Total Gap Length 0
Translation Table 11
Trna Count 48
Unspanned Gaps 0
Version Status latest
Wgs Master None

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page