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GCF_001273845.1

Leucobacter musarum

All Taxonomic Information Genome Characteristics NCBI Metadata
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinobacteria; o__Actinomycetales; f__Microbacteriaceae; g__Leucobacter; s__Leucobacter musarum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Leucobacter; s__Leucobacter musarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Leucobacter; s__Leucobacter musarum; x__Leucobacter musarum subsp. musarum
NCBI Type Material Yes
Genome Characteristics
Ambiguous Bases 0
CheckM Completeness 99.85
CheckM Contamination 0.58
CheckM Genome Count 580
CheckM Marker Count 286
CheckM Marker Lineage o__Actinomycetales (UID1572)
CheckM Marker Set Count 171
CheckM Strain Heterogeneity 0.0
Genome Representative True
Coding Bases 3147370
Coding Density 91.53
Contig Count 125
GC Count 2296216
GC Percentage 66.77
Genome Size 3438787
L50 Contigs 5
L50 Scaffolds 5
Longest Contig 875762
Longest Scaffold 875762
Mean Contig Length 27510
Mean Scaffold Length 27510
N50 Contigs 200785
N50 Scaffolds 200785
Protein Count 3174
Scaffold Count 125
SSU_Count 1
Total Gap Length 14
NCBI Metadata
Asm Name CBX152_1.1
Assembly Level Contig
Assembly Name CBX152_1.1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02673065
Country Cape Verde: Santa Antao
Date 2015-8-25
Genbank Assembly Accession GCA_001273845.1
Genome Representation full
Isolate None
Isolation Source nematode
Latitude Longitude None
Molecule Count 0
Ncrna Count 0
Organism Name Leucobacter musarum subsp. musarum
Protein Count 3147
Refseq Category representative genome
Region Count 0
Release Type major
Rrna Count 3
Seq Rel Date 2015/08/25
Spanned Gaps 0
Species Taxid 1930747
Ssu Count 1
Submitter University of Oxford
Taxid 1461261
Total Gap Length 0
Translation Table 11
Trna Count 47
Unspanned Gaps 0
Version Status latest
Wgs Master JHBW00000000.1

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page