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GCF_000813245.1

Thermofilum carboxyditrophus

All Taxonomic Information Genome Characteristics NCBI Metadata
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Crenarchaeota; c__Thermoprotei; o__Thermofilales; f__Thermofilaceae; g__Thermofilum; s__Thermofilum carboxyditrophus
Filtered NCBI Taxonomy d__Archaea; p__Crenarchaeota; c__Thermoprotei; o__Thermoproteales; f__Thermofilaceae; g__Thermofilum; s__Thermofilum carboxyditrophus
Unfiltered NCBI Taxonomy d__Archaea; x__TACK group; p__Crenarchaeota; c__Thermoprotei; o__Thermoproteales; f__Thermofilaceae; g__Thermofilum; s__Thermofilum carboxyditrophus; st__Thermofilum carboxyditrophus 1505
NCBI Type Material No
Genome Characteristics
Ambiguous Bases 0
CheckM Completeness 99.26
CheckM Contamination 0.74
CheckM Genome Count 59
CheckM Marker Count 174
CheckM Marker Lineage k__Archaea (UID146)
CheckM Marker Set Count 136
CheckM Strain Heterogeneity 0.0
Genome Representative True
Coding Bases 1578179
Coding Density 89.97
Contig Count 1
GC Count 814013
GC Percentage 46.40
Genome Size 1754190
L50 Contigs 1
L50 Scaffolds 1
Longest Contig 1754190
Longest Scaffold 1754190
Mean Contig Length 1754190
Mean Scaffold Length 1754190
N50 Contigs 1754190
N50 Scaffolds 1754190
Protein Count 1905
Scaffold Count 1
SSU_Count 1
Total Gap Length 0
NCBI Metadata
Asm Name ASM81324v1
Assembly Level Complete Genome
Assembly Name ASM81324v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03274240
Country Russia
Date 2015-1-2
Genbank Assembly Accession GCA_000813245.1
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
Ncrna Count 0
Organism Name Thermofilum carboxyditrophus 1505
Protein Count 1863
Refseq Category na
Region Count 0
Release Type major
Rrna Count 3
Seq Rel Date 2015/01/02
Spanned Gaps 0
Species Taxid 1483572
Ssu Count 1
Submitter Centre Bioengineering RAS
Taxid 697581
Total Gap Length 0
Translation Table 11
Trna Count 43
Unspanned Gaps 0
Version Status latest
Wgs Master None

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page