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GCA_002725315.1

UBA557 sp.

All Taxonomic Information Genome Characteristics NCBI Metadata
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Thermoplasmatota; c__MGII; o__MGII; f__MGIIB; g__UBA557; s__
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__; o__; f__; g__; s__
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__unclassified Euryarchaeota; x__unclassified Euryarchaeota (miscellaneous); s__Euryarchaeota archaeon
NCBI Type Material No
Genome Characteristics
Ambiguous Bases 0
CheckM Completeness 77.2
CheckM Contamination 0.8
CheckM Genome Count 148
CheckM Marker Count 188
CheckM Marker Lineage p__Euryarchaeota (UID3)
CheckM Marker Set Count 125
CheckM Strain Heterogeneity 0.0
Genome Representative True
Coding Bases 1351312
Coding Density 95.60
Contig Count 52
GC Count 739190
GC Percentage 52.40
Genome Size 1413436
L50 Contigs 13
L50 Scaffolds 13
Longest Contig 99208
Longest Scaffold 99460
Mean Contig Length 27130
Mean Scaffold Length 27181
N50 Contigs 36359
N50 Scaffolds 36385
Protein Count 1274
Scaffold Count 52
SSU_Count 0
Total Gap Length 2649
NCBI Metadata
Asm Name ASM272531v1
Assembly Level Contig
Assembly Name ASM272531v1
Assembly Type n/a
Bioproject PRJNA391943
Biosample SAMN07618823
Country None
Date 2017-10-26
Genbank Assembly Accession GCA_002725315.1
Genome Representation full
Isolate RS392
Isolation Source None
Latitude Longitude None
Molecule Count 0
Ncrna Count 0
Organism Name Euryarchaeota archaeon
Protein Count 1258
Refseq Category na
Region Count 0
Release Type major
Rrna Count 1
Seq Rel Date 2017/10/26
Spanned Gaps 0
Species Taxid 2026739
Ssu Count 0
Submitter Tara Oceans Consortium
Taxid 2026739
Total Gap Length 0
Translation Table 11
Trna Count 39
Unspanned Gaps 0
Version Status latest
Wgs Master PBOL00000000.1

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page