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UBA11384

UBA11384 sp.

All Taxonomic Information Genome Characteristics NCBI Metadata
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Halobacterota; c__Methanomicrobia; o__Methanomicrobiales; f__Methanoregulaceae; g__UBA11384; s__
Filtered NCBI Taxonomy Undefined
Unfiltered NCBI Taxonomy Undefined
NCBI Type Material No
Genome Characteristics
Ambiguous Bases 0
CheckM Completeness 70.17
CheckM Contamination 1.32
CheckM Genome Count 90
CheckM Marker Count 233
CheckM Marker Lineage p__Euryarchaeota (UID54)
CheckM Marker Set Count 152
CheckM Strain Heterogeneity 50.0
Genome Representative True
Coding Bases 1852852
Coding Density 85.99
Contig Count 406
GC Count 1434447
GC Percentage 66.66
Genome Size 2154672
L50 Contigs 102
L50 Scaffolds 96
Longest Contig 44803
Longest Scaffold 44807
Mean Contig Length 5299
Mean Scaffold Length 6191
N50 Contigs 6782
N50 Scaffolds 7237
Protein Count 2595
Scaffold Count 348
SSU_Count 0
Total Gap Length 2944
NCBI Metadata
Source SRA metagenome SRX327521

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page