GTDB
  • Browsers
    • Alphabetical table
    • Taxonomy tree
    • AnnoTree (Third party)
  • Tools
    • GTDB-Tk
    • Third Party
  • Downloads
  • Statistics
  • Help
    • About
    • FAQ
    • Contact us
  • All Fields
  • GTDB Taxonomy
  • NCBI Taxonomy
  • NCBI Organism name
  • NCBI Id

UBA9642

UBA9642 sp1

All Taxonomic Information Genome Characteristics NCBI Metadata
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Nanoarchaeota; c__Woesearchaeia; o__SM23-78; f__UBA9642; g__UBA9642; s__UBA9642 sp1
Filtered NCBI Taxonomy Undefined
Unfiltered NCBI Taxonomy Undefined
NCBI Type Material No
Genome Characteristics
Ambiguous Bases 0
CheckM Completeness 81.78
CheckM Contamination 0.0
CheckM Genome Count 207
CheckM Marker Count 149
CheckM Marker Lineage k__Archaea (UID2)
CheckM Marker Set Count 107
CheckM Strain Heterogeneity 0.0
Genome Representative True
Coding Bases 1327351
Coding Density 88.18
Contig Count 161
GC Count 498981
GC Percentage 33.38
Genome Size 1505299
L50 Contigs 24
L50 Scaffolds 18
Longest Contig 62005
Longest Scaffold 70730
Mean Contig Length 9283
Mean Scaffold Length 16186
N50 Contigs 19309
N50 Scaffolds 25443
Protein Count 1683
Scaffold Count 93
SSU_Count 1
Total Gap Length 10624
NCBI Metadata
Source SRA metagenome SRX1161881

CheckM Information

CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Assessment of genome quality can also be examined using plots depicting key genomic characteristics (e.g., GC, coding density) which highlight sequences outside the expected distributions of a typical genome. CheckM also provides tools for identifying genome bins that are likely candidates for merging based on marker set compatibility, similarity in genomic characteristics, and proximity within a reference genome tree.

For more information, please check the CheckM Wiki page.

Rank Information

d__ = Domain
p__ = Phylum
c__ = Class
o__ = Order
f__ = Family
g__ = Genus
s__ = Species
st__ = Strain
x__ = No rank

The NCBI taxonomy is as described in the current RefSeq release used by GTDB, which may not be the latest RefSeq release available at the NCBI website.

NCBI Information

The information on this table has been parsed from the NCBI FTP website.

Go to the NCBI Page